{
  "_id": "6a10661cacfb0bcc41ca8d7f",
  "Package": "forrescalc",
  "Title": "Calculation of Aggregated Values on Dendrometry, Regeneration\nand Vegetation of Forests, Starting from Individual Tree\nMeasures from Fieldmap",
  "Version": "0.0.1",
  "Authors@R": "c(\nperson(\"Els\", \"Lommelen\", , \"els.lommelen@inbo.be\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-3481-5684\", affiliation = \"Research Institute for Nature and Forest (INBO)\")),\nperson(\"Anja\", \"Leyman\", , \"anja.leyman@inbo.be\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-0292-6582\", affiliation = \"Research Institute for Nature and Forest (INBO)\")),\nperson(\"Research Institute for Nature and Forest (INBO)\", , , \"info@inbo.be\", role = c(\"cph\", \"fnd\"))\n)",
  "Description": "A collection of functions to load and aggregate\nmeasurements related to dendrometry, rejuvenation and\nvegetation, and to access plot level results from Flemish\nforest reserves in data package forresdat.",
  "License": "GPL-3",
  "URL": "https://inbo.github.io/forrescalc/,\nhttps://github.com/inbo/forrescalc",
  "BugReports": "https://github.com/inbo/forrescalc/issues",
  "VignetteBuilder": "knitr",
  "Config/checklist/communities": "inbo",
  "Config/checklist/keywords": "strict forest reserves; monitoring;\nforestry; Flanders; Belgium; dendrometry; rejuvenation; carbon;\ntemperate deciduous forests; regeneration; vegetation",
  "Encoding": "UTF-8",
  "Language": "en-GB",
  "Roxygen": "list(markdown = TRUE)",
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  "Config/pak/sysreqs": "cmake make libgit2-dev libicu-dev libssh2-1-dev\nlibuv1-dev unixodbc-dev libssl-dev libx11-dev",
  "Repository": "https://inbo.r-universe.dev",
  "Date/Publication": "2024-09-23 21:07:36 UTC",
  "RemoteUrl": "https://github.com/inbo/forrescalc",
  "RemoteRef": "HEAD",
  "RemoteSha": "4325507252548c7cc3f30800f6c4e09b4532a3b8",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-08 06:12:09 UTC",
    "User": "root"
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  "Author": "Els Lommelen [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3481-5684>, affiliation: Research\nInstitute for Nature and Forest (INBO)),\nAnja Leyman [aut] (ORCID: <https://orcid.org/0000-0002-0292-6582>,\naffiliation: Research Institute for Nature and Forest (INBO)),\nResearch Institute for Nature and Forest (INBO) [cph, fnd]",
  "Maintainer": "Els Lommelen <els.lommelen@inbo.be>",
  "MD5sum": "d44c3a6fa61f3a6ccdc47d218dcbfffb",
  "_user": "inbo",
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  "_created": "2026-05-08T06:12:09.000Z",
  "_published": "2026-05-22T14:20:11.978Z",
  "_distro": "noble",
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    "message": "Merge pull request #157 from inbo/testdatabase\n\nTestdatabase",
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  "_exports": [
    "add_zeros",
    "calc_deadw_decay_plot",
    "calc_deadw_decay_plot_species",
    "calc_dendro_plot",
    "calc_dendro_plot_species",
    "calc_diam_plot",
    "calc_diam_plot_species",
    "calc_diam_statistics_species",
    "calc_intact_deadwood",
    "calc_reg_core_area_height_spec",
    "calc_reg_core_area_species",
    "calc_reg_plot",
    "calc_reg_plot_height",
    "calc_reg_plot_height_species",
    "calc_reg_plot_species",
    "calc_variables_stem_level",
    "calc_variables_tree_level",
    "calc_veg_core_area_species",
    "calc_veg_plot",
    "calculate_dendrometry",
    "calculate_regeneration",
    "calculate_vegetation",
    "check_data_deadwood",
    "check_data_fmdb",
    "check_data_herblayer",
    "check_data_plotdetails",
    "check_data_plots",
    "check_data_regeneration",
    "check_data_regspecies",
    "check_data_shoots",
    "check_data_trees",
    "check_data_vegetation",
    "check_trees_evolution",
    "compare_periods_per_plot",
    "compose_stem_data",
    "create_statistics",
    "create_unique_tree_id",
    "from_access_to_forresdat",
    "from_forresdat_to_access",
    "give_diamclass_5cm",
    "load_data_deadwood",
    "load_data_dendrometry",
    "load_data_herblayer",
    "load_data_regeneration",
    "load_data_shoots",
    "load_data_vegetation",
    "load_height_models",
    "load_plotinfo",
    "make_table_wide",
    "read_forresdat",
    "read_forresdat_table",
    "remove_last_commit_forresdat",
    "remove_table_forresdat",
    "save_results_access",
    "save_results_csv",
    "save_results_forresdat"
  ],
  "_help": [
    {
      "page": "add_zeros",
      "title": "Add records with value zero for missing variable combinations in a given dataset",
      "topics": [
        "add_zeros"
      ]
    },
    {
      "page": "calc_deadw_decay_plot",
      "title": "aggregate parameters by decay stage, plot and year",
      "topics": [
        "calc_deadw_decay_plot"
      ]
    },
    {
      "page": "calc_deadw_decay_plot_species",
      "title": "aggregate parameters by decay stage, plot, tree species and year",
      "topics": [
        "calc_deadw_decay_plot_species"
      ]
    },
    {
      "page": "calc_dendro_plot",
      "title": "aggregate parameters by plot and year",
      "topics": [
        "calc_dendro_plot"
      ]
    },
    {
      "page": "calc_dendro_plot_species",
      "title": "aggregate parameters by plot and tree species",
      "topics": [
        "calc_dendro_plot_species"
      ]
    },
    {
      "page": "calc_diam_plot",
      "title": "aggregate parameters by diameter class, plot and year",
      "topics": [
        "calc_diam_plot"
      ]
    },
    {
      "page": "calc_diam_plot_species",
      "title": "aggregate parameters by diameter class, plot, tree species and year",
      "topics": [
        "calc_diam_plot_species"
      ]
    },
    {
      "page": "calc_diam_statistics_species",
      "title": "Give diameter statistics by forest reserve, species and year",
      "topics": [
        "calc_diam_statistics_species"
      ]
    },
    {
      "page": "calc_intact_deadwood",
      "title": "Calculate bole and crown volume of intact deadwood",
      "topics": [
        "calc_intact_deadwood"
      ]
    },
    {
      "page": "calc_reg_core_area_height_spec",
      "title": "aggregate regeneration parameters by plot, height, species and year",
      "topics": [
        "calc_reg_core_area_height_spec"
      ]
    },
    {
      "page": "calc_reg_core_area_species",
      "title": "aggregate regeneration parameters by plot, species and year",
      "topics": [
        "calc_reg_core_area_species"
      ]
    },
    {
      "page": "calc_reg_plot",
      "title": "calculate species number by plot and year",
      "topics": [
        "calc_reg_plot"
      ]
    },
    {
      "page": "calc_reg_plot_height",
      "title": "calculate species number by plot, tree height class and year",
      "topics": [
        "calc_reg_plot_height"
      ]
    },
    {
      "page": "calc_reg_plot_height_species",
      "title": "aggregate parameters by plot, tree height class, species and year",
      "topics": [
        "calc_reg_plot_height_species"
      ]
    },
    {
      "page": "calc_reg_plot_species",
      "title": "calculate regeneration parameters by plot, species and year",
      "topics": [
        "calc_reg_plot_species"
      ]
    },
    {
      "page": "calc_variables_stem_level",
      "title": "Calculate additional variables on stem level",
      "topics": [
        "calc_variables_stem_level"
      ]
    },
    {
      "page": "calc_variables_tree_level",
      "title": "Calculate additional variables on tree level",
      "topics": [
        "calc_variables_tree_level"
      ]
    },
    {
      "page": "calc_veg_core_area_species",
      "title": "aggregate vegetation parameters by core area, species and year",
      "topics": [
        "calc_veg_core_area_species"
      ]
    },
    {
      "page": "calc_veg_plot",
      "title": "aggregate vegetation parameters by plot and year",
      "topics": [
        "calc_veg_plot"
      ]
    },
    {
      "page": "calculate_dendrometry",
      "title": "Calculates and aggregates parameters on dendrometry of trees",
      "topics": [
        "calculate_dendrometry"
      ]
    },
    {
      "page": "calculate_regeneration",
      "title": "aggregates parameters on regeneration of trees",
      "topics": [
        "calculate_regeneration"
      ]
    },
    {
      "page": "calculate_vegetation",
      "title": "aggregates parameters on vegetation of forests",
      "topics": [
        "calculate_vegetation"
      ]
    },
    {
      "page": "check_data_deadwood",
      "title": "check table Deadwood from 'Fieldmap' database for inconsistencies",
      "topics": [
        "check_data_deadwood"
      ]
    },
    {
      "page": "check_data_fmdb",
      "title": "check tables from 'Fieldmap' database for inconsistencies",
      "topics": [
        "check_data_fmdb"
      ]
    },
    {
      "page": "check_data_herblayer",
      "title": "check table 'Herblayer' from 'Fieldmap' database for inconsistencies",
      "topics": [
        "check_data_herblayer"
      ]
    },
    {
      "page": "check_data_plotdetails",
      "title": "check table 'Plotdetails' from 'Fieldmap' database for inconsistencies",
      "topics": [
        "check_data_plotdetails"
      ]
    },
    {
      "page": "check_data_plots",
      "title": "check table 'Plots' from 'Fieldmap' database for inconsistencies",
      "topics": [
        "check_data_plots"
      ]
    },
    {
      "page": "check_data_regeneration",
      "title": "check table 'Regeneration' from 'Fieldmap' database for inconsistencies",
      "topics": [
        "check_data_regeneration"
      ]
    },
    {
      "page": "check_data_regspecies",
      "title": "check table 'RegSpecies' from 'Fieldmap' database for inconsistencies",
      "topics": [
        "check_data_regspecies"
      ]
    },
    {
      "page": "check_data_shoots",
      "title": "check table 'Shoots' from 'Fieldmap' database for inconsistencies",
      "topics": [
        "check_data_shoots"
      ]
    },
    {
      "page": "check_data_trees",
      "title": "check table 'Trees' from 'Fieldmap' database for inconsistencies",
      "topics": [
        "check_data_trees"
      ]
    },
    {
      "page": "check_data_vegetation",
      "title": "check table 'Vegetation' from 'Fieldmap' database for inconsistencies",
      "topics": [
        "check_data_vegetation"
      ]
    },
    {
      "page": "check_trees_evolution",
      "title": "check table 'Trees' from 'Fieldmap' database for inconsistencies between periods",
      "topics": [
        "check_trees_evolution"
      ]
    },
    {
      "page": "compare_periods_per_plot",
      "title": "compare parameters between periods (years that parameters are measured)",
      "topics": [
        "compare_periods_per_plot"
      ]
    },
    {
      "page": "compose_stem_data",
      "title": "Combine dendro data and shoot data to give detailed stem data",
      "topics": [
        "compose_stem_data"
      ]
    },
    {
      "page": "create_statistics",
      "title": "Calculate statistics for the given dataset",
      "topics": [
        "create_statistics"
      ]
    },
    {
      "page": "create_unique_tree_id",
      "title": "create_unique_tree_id for each individual tree over different years",
      "topics": [
        "create_unique_tree_id"
      ]
    },
    {
      "page": "from_access_to_forresdat",
      "title": "copy table(s) from access database to git repository 'forresdat'",
      "topics": [
        "from_access_to_forresdat"
      ]
    },
    {
      "page": "from_forresdat_to_access",
      "title": "copy table(s) from git repository 'forresdat' to access database",
      "topics": [
        "from_forresdat_to_access"
      ]
    },
    {
      "page": "give_diamclass_5cm",
      "title": "Calculate the diameter class of diameter measure data",
      "topics": [
        "give_diamclass_5cm"
      ]
    },
    {
      "page": "load_data_deadwood",
      "title": "retrieves data on logs from 'Fieldmap' database",
      "topics": [
        "load_data_deadwood"
      ]
    },
    {
      "page": "load_data_dendrometry",
      "title": "retrieve dendrometry data from 'Fieldmap' database",
      "topics": [
        "load_data_dendrometry"
      ]
    },
    {
      "page": "load_data_herblayer",
      "title": "retrieve species specific vegetation data from 'Fieldmap' database",
      "topics": [
        "load_data_herblayer"
      ]
    },
    {
      "page": "load_data_regeneration",
      "title": "retrieve regeneration data from 'Fieldmap' database",
      "topics": [
        "load_data_regeneration"
      ]
    },
    {
      "page": "load_data_shoots",
      "title": "retrieve data on shoots from 'Fieldmap' database",
      "topics": [
        "load_data_shoots"
      ]
    },
    {
      "page": "load_data_vegetation",
      "title": "retrieve vegetation data from 'Fieldmap' database",
      "topics": [
        "load_data_vegetation"
      ]
    },
    {
      "page": "load_height_models",
      "title": "retrieve height model data from git repository 'forresheights'",
      "topics": [
        "load_height_models"
      ]
    },
    {
      "page": "load_plotinfo",
      "title": "retrieve generic plot data from 'Fieldmap' database",
      "topics": [
        "load_plotinfo"
      ]
    },
    {
      "page": "make_table_wide",
      "title": "change dataframe from long to wide format",
      "topics": [
        "make_table_wide"
      ]
    },
    {
      "page": "read_forresdat",
      "title": "load data package from git repository 'forresdat'",
      "topics": [
        "read_forresdat"
      ]
    },
    {
      "page": "read_forresdat_table",
      "title": "load tables from git repository 'forresdat'",
      "topics": [
        "read_forresdat_table"
      ]
    },
    {
      "page": "remove_last_commit_forresdat",
      "title": "remove last local change from git repository 'forresdat'",
      "topics": [
        "remove_last_commit_forresdat"
      ]
    },
    {
      "page": "remove_table_forresdat",
      "title": "remove table(s) from data package 'forresdat'",
      "topics": [
        "remove_table_forresdat"
      ]
    },
    {
      "page": "save_results_access",
      "title": "save results of calculations in Access database",
      "topics": [
        "save_results_access"
      ]
    },
    {
      "page": "save_results_csv",
      "title": "save results of calculations as '.csv'-files",
      "topics": [
        "save_results_csv"
      ]
    },
    {
      "page": "save_results_forresdat",
      "title": "save results of calculations in git repository 'forresdat'",
      "topics": [
        "save_results_forresdat"
      ]
    }
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      "title": "Overview package forrescalc",
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        "Installation",
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        "Load data from Fieldmap database",
        "Calculations (aggregations)",
        "Umbrella functions",
        "Subfunctions",
        "Additional functions",
        "Save and retrieve data",
        "Update forresdat",
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      "modified": "2024-09-23 21:07:36",
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