{
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  "Package": "n2kanalysis",
  "Title": "Generic Functions to Analyse Data from the 'Natura 2000'\nMonitoring",
  "Version": "0.4.1",
  "Authors@R": "c(\nperson(\"Thierry\", \"Onkelinx\", , \"thierry.onkelinx@inbo.be\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-8804-4216\", affiliation = \"Research Institute for Nature and Forest (INBO)\")),\nperson(\"Research Institute for Nature and Forest (INBO)\", , , \"info@inbo.be\", role = c(\"cph\", \"fnd\"),\ncomment = c(ROR = \"00j54wy13\"))\n)",
  "Description": "All generic functions and classes for the analysis for the\n'Natura 2000' monitoring. The classes contain all required data\nand definitions to fit the model without the need to access\nother sources. Potentially they might need access to one or\nmore parent objects. An aggregation object might for example\nneed the result of an imputation object. The actual definition\nof the analysis, using these generic function and classes, is\ndefined in dedictated analysis R packages for every monitoring\nscheme. For example 'abvanalysis' and 'watervogelanalysis'.",
  "License": "GPL-3",
  "URL": "https://doi.org/10.5281/zenodo.3576047,\nhttps://inbo.github.io/n2kanalysis/",
  "BugReports": "https://github.com/inbo/n2kanalysis/issues",
  "VignetteBuilder": "knitr",
  "Remotes": [
    "inbo/multimput",
    "inbo/n2khelper"
  ],
  "Additional_repositories": "https://inla.r-inla-download.org/R/stable,\nhttps://inbo.r-universe.dev",
  "Config/checklist/communities": "inbo",
  "Config/checklist/keywords": "analysis, reproducible research, natura\n2000, monitoring",
  "Encoding": "UTF-8",
  "Language": "en-GB",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Collate": "'n2k_parameter_class.R' 'n2k_anomaly_class.R'\n'n2k_analysis_version_class.R' 'combine.R'\n'n2k_contrast_class.R' 'n2k_analysis_metadata_class.R'\n'n2k_result_class.R' 'combine_result.R' 'connect_inbo_s3.R'\n'import_s3_classes.R' 'delete_model.R' 'display.R'\n'n2k_model_class.R' 'n2k_inla_comparison_class.R'\n'n2k_inla_class.R' 'n2k_aggregate_class.R'\n'n2k_model_imputed_class.R' 'extract.R' 'fit_every_model.R'\n'fit_model.R' 'fit_model_character.R'\n'fit_model_n2k_aggregate.R' 'n2k_composite_class.R'\n'fit_model_n2k_composite.R' 'n2k_hurdle_imputed_class.R'\n'fit_model_n2k_hurdle_imputed.R' 'fit_model_n2k_inla.R'\n'fit_model_n2k_inla_comparison.R' 'n2k_manifest_class.R'\n'fit_model_n2k_manifest.R' 'fit_model_n2k_model_imputed.R'\n'spde_class.R' 'n2k_spde_class.R' 'fit_model_n2k_spde.R'\n'fit_model_s3_object.R' 'get_analysis_date.R'\n'get_analysis_version.R' 'get_anomaly.R'\n'get_anomaly_n2k_inla.R' 'get_anomaly_n2k_model.R' 'get_data.R'\n'get_datafield_id.R' 'get_file_fingerprint.R' 'get_formula.R'\n'get_location_group_id.R' 'get_model.R' 'get_model_parameter.R'\n'get_model_parameter_n2k_aggregated.R'\n'get_model_parameter_n2k_composite.R'\n'get_model_parameter_n2k_hurdle_imputed.R'\n'get_model_parameter_n2k_inla.R'\n'get_model_parameter_n2k_inla_comparison.R'\n'get_model_parameter_n2k_model_imputed.R' 'get_model_type.R'\n'get_parents.R' 'get_result.R' 'get_result_character.R'\n'get_result_n2k_inla.R' 'get_result_n2k_model.R'\n'get_result_n2kmanifest.R' 'get_result_s3_object.R'\n'get_scheme_id.R' 'get_seed.R' 'get_species_group_id.R'\n'get_status_fingerprint.R' 'inla_inverse.R' 'make_a.R'\n'manifest_yaml_to_bash.R' 'mark_obsolete_dataset.R'\n'moving_average.R' 'moving_difference.R' 'moving_trend.R'\n'n2k_aggregated.R' 'n2k_composite.R' 'n2k_hurdle_imputed.R'\n'n2k_import_class.R' 'n2k_import.R' 'n2k_inla.R'\n'n2k_inla_comparison.R' 'n2k_manifest.R' 'n2k_model_imputed.R'\n'n2k_spde.R' 'parent_status.R' 'read_manifest.R' 'read_model.R'\n'read_result.R' 'result_estimate.R'\n'result_estimate_character.R' 'result_estimate_n2k_result.R'\n'result_metadata.R' 'result_metadata_character.R'\n'result_metadata_n2k_result.R'\n'select_factor_count_strictly_positive.R'\n'select_factor_treshold.R' 'select_observed_range.R'\n'session_package.R' 'sha1.R' 'spde.R' 'spde2matern.R'\n'spde2mesh.R' 'status.R' 'store_manifest.R'\n'store_manifest_yaml.R' 'store_model.R' 'union.R'\n'valid_object.R' 'write_s3_fun.R'",
  "Repository": "https://inbo.r-universe.dev",
  "Date/Publication": "2026-04-08 16:18:20 UTC",
  "RemoteUrl": "https://github.com/inbo/n2kanalysis",
  "RemoteRef": "HEAD",
  "RemoteSha": "1a76ccfbf57f05f40a65337df513c13491225e40",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-08 07:21:42 UTC",
    "User": "root"
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  "Author": "Thierry Onkelinx [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-8804-4216>, affiliation: Research\nInstitute for Nature and Forest (INBO)),\nResearch Institute for Nature and Forest (INBO) [cph, fnd] (ROR:\n<https://ror.org/00j54wy13>)",
  "Maintainer": "Thierry Onkelinx <thierry.onkelinx@inbo.be>",
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  "_buildurl": "https://github.com/r-universe/inbo/actions/runs/27122021736",
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    "connect_inbo_s3",
    "delete_model",
    "display",
    "extract",
    "fit_every_model",
    "fit_model",
    "get_analysis_date",
    "get_analysis_version",
    "get_anomaly",
    "get_data",
    "get_datafield_id",
    "get_file_fingerprint",
    "get_formula",
    "get_location_group_id",
    "get_model",
    "get_model_parameter",
    "get_model_type",
    "get_parents",
    "get_result",
    "get_scheme_id",
    "get_seed",
    "get_species_group_id",
    "get_status_fingerprint",
    "inla_inverse",
    "make_a",
    "manifest_yaml_to_bash",
    "mark_obsolete_dataset",
    "moving_average",
    "moving_difference",
    "moving_trend",
    "n2k_aggregate",
    "n2k_composite",
    "n2k_hurdle_imputed",
    "n2k_import",
    "n2k_inla",
    "n2k_inla_comparison",
    "n2k_manifest",
    "n2k_model_imputed",
    "n2k_spde",
    "order_manifest",
    "parent_status",
    "parent_status<-",
    "read_manifest",
    "read_model",
    "read_result",
    "result_estimate",
    "result_metadata",
    "select_factor_count_non_zero",
    "select_factor_threshold",
    "select_observed_range",
    "session_package",
    "sha1",
    "spde",
    "spde2matern",
    "spde2mesh",
    "status",
    "status<-",
    "store_manifest",
    "store_manifest_yaml",
    "store_model",
    "union",
    "validObject"
  ],
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    {
      "page": "combine",
      "title": "Combine multiple n2k objects",
      "topics": [
        "combine",
        "combine,n2kAnalysisVersion-method",
        "combine,n2kAnalysisVersion-methods",
        "combine,n2kAnamoly-methods",
        "combine,n2kAnomaly-method",
        "combine,n2kParameter-method",
        "combine,n2kParameter-methods",
        "combine,n2kResult-method",
        "combine,n2kResult-methods"
      ]
    },
    {
      "page": "connect_inbo_s3",
      "title": "Set environment variables for INBO S3 bucket",
      "topics": [
        "connect_inbo_s3"
      ]
    },
    {
      "page": "delete_model",
      "title": "Delete an 'n2kModel' object",
      "topics": [
        "delete_model",
        "delete_model,ANY,character-method",
        "delete_model,ANY,s3_bucket-method"
      ]
    },
    {
      "page": "display",
      "title": "Display a message.",
      "topics": [
        "display"
      ]
    },
    {
      "page": "extract",
      "title": "Extract the relevant coefficients",
      "topics": [
        "extract",
        "extract,ANY,character-method",
        "extract,ANY,n2kInla-method",
        "extract,ANY,n2kModelImputed-method",
        "extract,character-methods",
        "extract,n2kInla-methods",
        "extract,n2kModelImputed-methods"
      ]
    },
    {
      "page": "fit_every_model",
      "title": "Fit the model to the analysis files",
      "topics": [
        "fit_every_model"
      ]
    },
    {
      "page": "fit_model",
      "title": "Fit an 'n2kModel' object",
      "topics": [
        "fit_model",
        "fit_model,character-method",
        "fit_model,n2kAggregate-method",
        "fit_model,n2kComposite-method",
        "fit_model,n2kHurdleImputed-method",
        "fit_model,n2kInla-method",
        "fit_model,n2kInlaComparison-method",
        "fit_model,n2kManifest-method",
        "fit_model,n2kModelImputed-method",
        "fit_model,n2kSpde-method",
        "fit_model,s3_object-method"
      ]
    },
    {
      "page": "get_analysis_date",
      "title": "Get the analysis date of an 'n2kModel' object",
      "topics": [
        "get_analysis_date",
        "get_analysis_date,n2kAnalysisMetadata-method",
        "get_analysis_date,n2kModel-methods"
      ]
    },
    {
      "page": "get_analysis_version",
      "title": "Get an analysis version",
      "topics": [
        "get_analysis_version",
        "get_analysis_version,data.frame-method",
        "get_analysis_version,n2kAnalysisMetadata-method",
        "get_analysis_version,n2kAnalysisMetadata-methods",
        "get_analysis_version,sessionInfo-method",
        "get_analysis_version,sessionInfo-methods"
      ]
    },
    {
      "page": "get_anomaly",
      "title": "Get the anomalies from a model",
      "topics": [
        "get_anomaly",
        "get_anomaly,n2kInla-method",
        "get_anomaly,n2kInla-methods",
        "get_anomaly,n2kModel-method"
      ]
    },
    {
      "page": "get_data",
      "title": "Get the data of an 'n2kModel' object",
      "topics": [
        "get_data",
        "get_data,n2kInla-method",
        "get_data,n2kInla-methods"
      ]
    },
    {
      "page": "get_datafield_id",
      "title": "Get the data field id",
      "topics": [
        "get_datafield_id"
      ]
    },
    {
      "page": "get_file_fingerprint",
      "title": "Get the file fingerprint of an 'n2kModel' object",
      "topics": [
        "get_file_fingerprint",
        "get_file_fingerprint,n2kAnalysisMetadata-method",
        "get_file_fingerprint,n2kAnalysisMetadata-methods",
        "get_file_fingerprint,n2kManifest-method",
        "get_file_fingerprint,n2kManifest-methods"
      ]
    },
    {
      "page": "get_formula",
      "title": "Get the formula of an 'n2kModel' object",
      "topics": [
        "get_formula",
        "get_formula,n2kAnalysisMetadata-method",
        "get_formula,n2kAnalysisMetadata-methods"
      ]
    },
    {
      "page": "get_location_group_id",
      "title": "Get the location group id of an 'n2kModel' object",
      "topics": [
        "get_location_group_id",
        "get_location_group_id,n2kAnalysisMetadata-method",
        "get_location_group_id,n2kAnalysisMetadata-methods"
      ]
    },
    {
      "page": "get_model",
      "title": "Get the model of a 'n2kModel' object",
      "topics": [
        "get_model",
        "get_model,character-method",
        "get_model,character-methods",
        "get_model,n2kInla-method",
        "get_model,n2kInla-methods"
      ]
    },
    {
      "page": "get_model_parameter",
      "title": "Add the model parameters from a model",
      "topics": [
        "get_model_parameter",
        "get_model_parameter,n2kAggregate-method",
        "get_model_parameter,n2kComposite-method",
        "get_model_parameter,n2kHurdleImputed-method",
        "get_model_parameter,n2kInla-method",
        "get_model_parameter,n2kInlaComparison-method",
        "get_model_parameter,n2kModelImputed-method"
      ]
    },
    {
      "page": "get_model_type",
      "title": "Get the model type of an 'n2kModel' object",
      "topics": [
        "get_model_type",
        "get_model_type,n2kAnalysisMetadata-method",
        "get_model_type,n2kAnalysisMetadata-methods"
      ]
    },
    {
      "page": "get_parents",
      "title": "Get the object of the parent analyses of an 'n2kModel' object",
      "topics": [
        "get_parents"
      ]
    },
    {
      "page": "get_result",
      "title": "Add the results from an analysis",
      "topics": [
        "get_result",
        "get_result,character,character-method",
        "get_result,character,s3_bucket-method",
        "get_result,n2kInla,ANY-method",
        "get_result,n2kManifest,character-method",
        "get_result,n2kManifest,s3_bucket-method",
        "get_result,n2kModel,ANY-method",
        "get_result,s3_object,ANY-method"
      ]
    },
    {
      "page": "get_scheme_id",
      "title": "Get the 'scheme_id' of an 'n2kModel' object",
      "topics": [
        "get_scheme_id",
        "get_scheme_id,n2kAnalysisMetadata-method",
        "get_scheme_id,n2kAnalysisMetadata-methods"
      ]
    },
    {
      "page": "get_seed",
      "title": "Get the seed of an 'n2kModel' object",
      "topics": [
        "get_seed",
        "get_seed,n2kAnalysisMetadata-method",
        "get_seed,n2kAnalysisMetadata-methods"
      ]
    },
    {
      "page": "get_species_group_id",
      "title": "Get the species group id of an 'n2kModel' object",
      "topics": [
        "get_species_group_id",
        "get_species_group_id,n2kAnalysisMetadata-method",
        "get_species_group_id,n2kAnalysisMetadata-methods"
      ]
    },
    {
      "page": "get_status_fingerprint",
      "title": "Get the status fingerprint of an 'n2kModel' object",
      "topics": [
        "get_status_fingerprint",
        "get_status_fingerprint,n2kAnalysisMetadata-method",
        "get_status_fingerprint,n2kAnalysisMetadata-methods"
      ]
    },
    {
      "page": "inla_inverse",
      "title": "Calculate the mean and 95\\ marginal",
      "topics": [
        "inla_inverse"
      ]
    },
    {
      "page": "make_a",
      "title": "Convert an 'Spde' object to a A object",
      "topics": [
        "make_a",
        "make_a,Spde-method"
      ]
    },
    {
      "page": "manifest_yaml_to_bash",
      "title": "Convert a manifest yaml file into a bash script",
      "topics": [
        "manifest_yaml_to_bash",
        "manifest_yaml_to_bash,character-method",
        "manifest_yaml_to_bash,s3_bucket-method"
      ]
    },
    {
      "page": "mark_obsolete_dataset",
      "title": "Find and mark obsolete datasets",
      "topics": [
        "mark_obsolete_dataset"
      ]
    },
    {
      "page": "moving_average",
      "title": "Calculate moving trend coefficients",
      "topics": [
        "moving_average"
      ]
    },
    {
      "page": "moving_difference",
      "title": "Calculate coefficients for a moving difference",
      "topics": [
        "moving_difference"
      ]
    },
    {
      "page": "moving_trend",
      "title": "Calculate moving trend coefficients",
      "topics": [
        "moving_trend"
      ]
    },
    {
      "page": "n2k_aggregate",
      "title": "Create an 'n2kAggregate' object",
      "topics": [
        "n2k_aggregate",
        "n2k_aggregate,ANY-method",
        "n2k_aggregate,n2kAggregate-methods"
      ]
    },
    {
      "page": "n2k_composite",
      "title": "Create an 'n2kComposite' object",
      "topics": [
        "n2k_composite",
        "n2k_composite,data.frame-method",
        "n2k_composite,n2kComposite-methods"
      ]
    },
    {
      "page": "n2k_hurdle_imputed",
      "title": "Create an 'n2kHurdleImputed' object",
      "topics": [
        "n2k_hurdle_imputed",
        "n2k_hurdle_imputed,n2kHurdleImputed-methods",
        "n2k_hurdle_imputed,n2kInla-method"
      ]
    },
    {
      "page": "n2k_import",
      "title": "Create an 'n2kImport' object",
      "topics": [
        "n2k_import",
        "n2k_import,ANY-method"
      ]
    },
    {
      "page": "n2k_inla",
      "title": "Create an 'n2kInla' object",
      "topics": [
        "n2k_inla",
        "n2k_inla,data.frame,ANY-method",
        "n2k_inla,n2kInla,inla-method",
        "n2k_inla,n2kInla-methods"
      ]
    },
    {
      "page": "n2k_inla_comparison",
      "title": "Create an 'n2kInlaComparison' object",
      "topics": [
        "n2k_inla_comparison",
        "n2k_inla_comparison,data.frame-method",
        "n2k_inla_comparison,n2kInlaComparison-methods"
      ]
    },
    {
      "page": "n2k_manifest",
      "title": "Create an 'n2kManifest' object",
      "topics": [
        "n2k_manifest",
        "n2k_manifest,data.frame-method",
        "n2k_manifest,n2kManifest-methods"
      ]
    },
    {
      "page": "n2k_model_imputed",
      "title": "Create an 'n2kModelImputed' object",
      "topics": [
        "n2k_model_imputed",
        "n2k_model_imputed,ANY-method",
        "n2k_model_imputed,n2kModelImputed-methods"
      ]
    },
    {
      "page": "n2k_spde",
      "title": "Create an 'n2kSpde' object",
      "topics": [
        "n2k_spde",
        "n2k_spde,data.frame,ANY-method",
        "n2k_spde,n2kSpde,inla-method",
        "n2k_spde,n2kSpde-methods"
      ]
    },
    {
      "page": "n2kAggregate-class",
      "title": "The 'n2kAggregate' class",
      "topics": [
        "n2kAggregate-class"
      ]
    },
    {
      "page": "n2kAnalysisMetadata-class",
      "title": "The 'n2kAnalysisMetadata' class",
      "topics": [
        "n2kAnalysisMetadata-class"
      ]
    },
    {
      "page": "n2kAnalysisVersion-class",
      "title": "The 'n2kAnalysisVersion' class",
      "topics": [
        "n2kAnalysisVersion-class"
      ]
    },
    {
      "page": "n2kAnomaly-class",
      "title": "The 'n2kAnomaly' class",
      "topics": [
        "n2kAnomaly-class"
      ]
    },
    {
      "page": "n2kComposite-class",
      "title": "The 'n2kComposite' class",
      "topics": [
        "n2kComposite-class"
      ]
    },
    {
      "page": "n2kContrast-class",
      "title": "The 'n2kContrast' class",
      "topics": [
        "n2kContrast-class"
      ]
    },
    {
      "page": "n2kHurdleImputed-class",
      "title": "The 'n2kHurdleImputed' class",
      "topics": [
        "n2kHurdleImputed-class"
      ]
    },
    {
      "page": "n2kImport-class",
      "title": "The 'n2kImport' class",
      "topics": [
        "n2kImport-class"
      ]
    },
    {
      "page": "n2kInla-class",
      "title": "The 'n2kInla' class",
      "topics": [
        "n2kInla-class"
      ]
    },
    {
      "page": "n2kInlaComparison-class",
      "title": "The 'n2kInlaComparison' class",
      "topics": [
        "n2kInlaComparison-class"
      ]
    },
    {
      "page": "n2kManifest-class",
      "title": "The 'n2kManifest' class",
      "topics": [
        "n2kManifest-class"
      ]
    },
    {
      "page": "n2kModel-class",
      "title": "The 'n2kModel' class",
      "topics": [
        "n2kModel-class"
      ]
    },
    {
      "page": "n2kModelImputed-class",
      "title": "The 'n2kModelImputed' class",
      "topics": [
        "n2kModelImputed-class"
      ]
    },
    {
      "page": "n2kParameter-class",
      "title": "The 'n2kParameter' class",
      "topics": [
        "n2kParameter-class"
      ]
    },
    {
      "page": "n2kResult-class",
      "title": "The 'n2kResult' class",
      "topics": [
        "n2kResult-class"
      ]
    },
    {
      "page": "n2kSpde-class",
      "title": "The 'n2kSpde' class",
      "topics": [
        "n2kSpde-class"
      ]
    },
    {
      "page": "order_manifest",
      "title": "Convert a manifest in vector of analysis fingerprints",
      "topics": [
        "order_manifest"
      ]
    },
    {
      "page": "parent_status",
      "title": "Get the parent status of an 'n2kModel'",
      "topics": [
        "parent_status",
        "parent_status,n2kAnalysisMetadata-method",
        "parent_status,n2kAnalysisMetadata-methods"
      ]
    },
    {
      "page": "parent_status_change",
      "title": "Overwrite the status of an 'n2kAnalysisMetadata'",
      "topics": [
        "parent_status<-",
        "parent_status<-,n2kComposite-method"
      ]
    },
    {
      "page": "read_manifest",
      "title": "Read a 'n2kManifest' object",
      "topics": [
        "read_manifest",
        "read_manifest,character-method",
        "read_manifest,s3_bucket-method"
      ]
    },
    {
      "page": "read_model",
      "title": "Read an 'n2kModel' object",
      "topics": [
        "read_model",
        "read_model,ANY,ANY-method",
        "read_model,ANY,character-method",
        "read_model,ANY,s3_bucket-method"
      ]
    },
    {
      "page": "read_result",
      "title": "Read an 'n2kResult' object",
      "topics": [
        "read_result",
        "read_result,ANY,ANY-method",
        "read_result,ANY,character-method",
        "read_result,ANY,s3_bucket-method"
      ]
    },
    {
      "page": "result_estimate",
      "title": "Aggregate all results estimates in a single dataframe",
      "topics": [
        "result_estimate",
        "result_estimate,character-method",
        "result_estimate,n2kResult-method"
      ]
    },
    {
      "page": "result_metadata",
      "title": "Aggregate all results meta data in a single dataframe",
      "topics": [
        "result_metadata",
        "result_metadata,character-method",
        "result_metadata,n2kResult-method"
      ]
    },
    {
      "page": "select_factor_count_non_zero",
      "title": "Select data based on the number of presences per category",
      "topics": [
        "select_factor_count_non_zero"
      ]
    },
    {
      "page": "select_factor_threshold",
      "title": "Select the observations based on the average of a factor",
      "topics": [
        "select_factor_threshold"
      ]
    },
    {
      "page": "select_observed_range",
      "title": "Limit the observation to the range in which the species is present",
      "topics": [
        "select_observed_range"
      ]
    },
    {
      "page": "session_package",
      "title": "Convert a 'sessionInfo()' to a data.frame of packages",
      "topics": [
        "session_package",
        "session_package,sessionInfo-method",
        "session_package,sessionInfo-methods"
      ]
    },
    {
      "page": "spde",
      "title": "Create an 'Spde' object",
      "topics": [
        "spde"
      ]
    },
    {
      "page": "Spde-class",
      "title": "The 'spde' class",
      "topics": [
        "Spde-class"
      ]
    },
    {
      "page": "spde2matern",
      "title": "Convert an 'Spde' object to a 'matern' object",
      "topics": [
        "spde2matern"
      ]
    },
    {
      "page": "spde2mesh",
      "title": "Convert an 'Spde' object to a mesh object",
      "topics": [
        "spde2matern,Spde-method",
        "spde2mesh",
        "spde2mesh,Spde-method"
      ]
    },
    {
      "page": "status",
      "title": "Get the status of an 'n2kModel'",
      "topics": [
        "status",
        "status,character-method",
        "status,character-methods",
        "status,n2kAnalysisMetadata-method",
        "status,n2kAnalysisMetadata-methods"
      ]
    },
    {
      "page": "status_change",
      "title": "Overwrite the status of an 'n2kAnalysisMetadata'",
      "topics": [
        "status<-",
        "status<-,n2kAggregate-method",
        "status<-,n2kComposite-method",
        "status<-,n2kHurdleImputed-method",
        "status<-,n2kInla-method",
        "status<-,n2kInlaComparison-method",
        "status<-,n2kModelImputed-method"
      ]
    },
    {
      "page": "store_manifest",
      "title": "Store an 'n2kManifest' object",
      "topics": [
        "store_manifest",
        "store_manifest,ANY,character-method",
        "store_manifest,ANY,s3_bucket-method"
      ]
    },
    {
      "page": "store_manifest_yaml",
      "title": "Store a Docker configuration",
      "topics": [
        "store_manifest_yaml",
        "store_manifest_yaml,ANY,character-method",
        "store_manifest_yaml,ANY,s3_bucket-method"
      ]
    },
    {
      "page": "store_model",
      "title": "Store an 'n2kModel' object",
      "topics": [
        "store_model",
        "store_model,ANY,character-method",
        "store_model,ANY,s3_bucket-method"
      ]
    },
    {
      "page": "union",
      "title": "Make a union of 'AnalysisVersions'",
      "topics": [
        "union"
      ]
    },
    {
      "page": "validObject",
      "title": "Get the validity of objects in files",
      "topics": [
        "validObject,character-method",
        "validObject,character-methods"
      ]
    }
  ],
  "_readme": "https://github.com/inbo/n2kanalysis/raw/HEAD/README.md",
  "_rundeps": [
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    "xml2",
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  ],
  "_vignettes": [
    {
      "source": "workflow.Rmd",
      "filename": "workflow.html",
      "title": "Using n2kanalysis to analyse monitoring data",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Concept",
        "Workflow",
        "Import the relevant data",
        "Generate the analysis objects",
        "Fit the models",
        "Extract the results",
        "Traceable and auditable",
        "Portable",
        "Efficient",
        "Metadata",
        "Definition of the model",
        "Scheme, species and location",
        "Time-stamp",
        "Used packages",
        "Linked analyses",
        "Available models",
        "n2k_import()",
        "n2k_inla()",
        "n2k_inla_comparison()",
        "n2k_composite()",
        "n2k_hurdle_imputed()",
        "n2k_aggregate()",
        "n2k_modelimputed()",
        "Manifest",
        "Docker"
      ],
      "created": "2024-02-12 10:30:19",
      "modified": "2024-02-12 10:30:19",
      "commits": 1
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  "_score": 3.1760912590556813,
  "_indexed": true,
  "_nocasepkg": "n2kanalysis",
  "_universes": [
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