Package: n2kanalysis
Title: Generic Functions to Analyse Data from the 'Natura 2000'
        Monitoring
Version: 0.4.1
Authors@R: c(
    person("Thierry", "Onkelinx", , "thierry.onkelinx@inbo.be", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-8804-4216", affiliation = "Research Institute for Nature and Forest (INBO)")),
    person("Research Institute for Nature and Forest (INBO)", , , "info@inbo.be", role = c("cph", "fnd"),
           comment = c(ROR = "00j54wy13"))
  )
Description: All generic functions and classes for the analysis for the
        'Natura 2000' monitoring. The classes contain all required data
        and definitions to fit the model without the need to access
        other sources. Potentially they might need access to one or
        more parent objects. An aggregation object might for example
        need the result of an imputation object. The actual definition
        of the analysis, using these generic function and classes, is
        defined in dedictated analysis R packages for every monitoring
        scheme. For example 'abvanalysis' and 'watervogelanalysis'.
License: GPL-3
URL: https://doi.org/10.5281/zenodo.3576047,
        https://inbo.github.io/n2kanalysis/
BugReports: https://github.com/inbo/n2kanalysis/issues
Depends: R (>= 4.2.0)
Imports: assertthat (>= 0.2.1), aws.s3, digest (>= 0.6.23.2), dplyr,
        fs, git2rdata (>= 0.5.0), MASS, methods, multimput (>= 0.2.14),
        n2khelper (>= 0.5.0), purrr, rlang, RODBC, tibble, tidyr (>=
        0.4.0), tools, yaml
Suggests: fmesher, INLA (>= 23.04.24), knitr, Matrix, parallel,
        rmarkdown, sf, sn, testthat (>= 2.0.1)
VignetteBuilder: knitr
Remotes: inbo/multimput, inbo/n2khelper
Additional_repositories: https://inla.r-inla-download.org/R/stable,
        https://inbo.r-universe.dev
Config/checklist/communities: inbo
Config/checklist/keywords: analysis, reproducible research, natura
        2000, monitoring
Encoding: UTF-8
Language: en-GB
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Collate: 'n2k_parameter_class.R' 'n2k_anomaly_class.R'
        'n2k_analysis_version_class.R' 'combine.R'
        'n2k_contrast_class.R' 'n2k_analysis_metadata_class.R'
        'n2k_result_class.R' 'combine_result.R' 'connect_inbo_s3.R'
        'import_s3_classes.R' 'delete_model.R' 'display.R'
        'n2k_model_class.R' 'n2k_inla_comparison_class.R'
        'n2k_inla_class.R' 'n2k_aggregate_class.R'
        'n2k_model_imputed_class.R' 'extract.R' 'fit_every_model.R'
        'fit_model.R' 'fit_model_character.R'
        'fit_model_n2k_aggregate.R' 'n2k_composite_class.R'
        'fit_model_n2k_composite.R' 'n2k_hurdle_imputed_class.R'
        'fit_model_n2k_hurdle_imputed.R' 'fit_model_n2k_inla.R'
        'fit_model_n2k_inla_comparison.R' 'n2k_manifest_class.R'
        'fit_model_n2k_manifest.R' 'fit_model_n2k_model_imputed.R'
        'spde_class.R' 'n2k_spde_class.R' 'fit_model_n2k_spde.R'
        'fit_model_s3_object.R' 'get_analysis_date.R'
        'get_analysis_version.R' 'get_anomaly.R'
        'get_anomaly_n2k_inla.R' 'get_anomaly_n2k_model.R' 'get_data.R'
        'get_datafield_id.R' 'get_file_fingerprint.R' 'get_formula.R'
        'get_location_group_id.R' 'get_model.R' 'get_model_parameter.R'
        'get_model_parameter_n2k_aggregated.R'
        'get_model_parameter_n2k_composite.R'
        'get_model_parameter_n2k_hurdle_imputed.R'
        'get_model_parameter_n2k_inla.R'
        'get_model_parameter_n2k_inla_comparison.R'
        'get_model_parameter_n2k_model_imputed.R' 'get_model_type.R'
        'get_parents.R' 'get_result.R' 'get_result_character.R'
        'get_result_n2k_inla.R' 'get_result_n2k_model.R'
        'get_result_n2kmanifest.R' 'get_result_s3_object.R'
        'get_scheme_id.R' 'get_seed.R' 'get_species_group_id.R'
        'get_status_fingerprint.R' 'inla_inverse.R' 'make_a.R'
        'manifest_yaml_to_bash.R' 'mark_obsolete_dataset.R'
        'moving_average.R' 'moving_difference.R' 'moving_trend.R'
        'n2k_aggregated.R' 'n2k_composite.R' 'n2k_hurdle_imputed.R'
        'n2k_import_class.R' 'n2k_import.R' 'n2k_inla.R'
        'n2k_inla_comparison.R' 'n2k_manifest.R' 'n2k_model_imputed.R'
        'n2k_spde.R' 'parent_status.R' 'read_manifest.R' 'read_model.R'
        'read_result.R' 'result_estimate.R'
        'result_estimate_character.R' 'result_estimate_n2k_result.R'
        'result_metadata.R' 'result_metadata_character.R'
        'result_metadata_n2k_result.R'
        'select_factor_count_strictly_positive.R'
        'select_factor_treshold.R' 'select_observed_range.R'
        'session_package.R' 'sha1.R' 'spde.R' 'spde2matern.R'
        'spde2mesh.R' 'status.R' 'store_manifest.R'
        'store_manifest_yaml.R' 'store_model.R' 'union.R'
        'valid_object.R' 'write_s3_fun.R'
Repository: https://inbo.r-universe.dev
Date/Publication: 2026-04-08 16:18:20 UTC
RemoteUrl: https://github.com/inbo/n2kanalysis
RemoteRef: HEAD
RemoteSha: 1a76ccfbf57f05f40a65337df513c13491225e40
NeedsCompilation: no
Packaged: 2026-07-08 09:41:53 UTC; root
Author: Thierry Onkelinx [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-8804-4216>, affiliation: Research
    Institute for Nature and Forest (INBO)),
  Research Institute for Nature and Forest (INBO) [cph, fnd] (ROR:
    <https://ror.org/00j54wy13>)
Maintainer: Thierry Onkelinx <thierry.onkelinx@inbo.be>