NEWS

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trias 3.2.4

• Add argument status_warning to apply_gam() to control whether a warning textual annotation is added to the plot when the GAM model cannot be used to assess the status of a species (e.g. due to insufficient data). The default is TRUE to maintain the previous behavior, but it can be set to FALSE to suppress the warning annotation in the plot (#186).
• Remove default argument for required argument y_var in apply_decision_rules() (#188).

trias 3.2.3

• Fix a bug in update_download_list(). The fix ensures that the function can handle cases where there are no existing downloads without throwing an error (#183).

trias 3.2.2

• Fix y-axis ticks values in visualize_pathways_level1() and visualize_pathways_level2() plots (#181).

trias 3.2.1

• Update codemeta.json. Try to solve zenodo integration (#178).
• README.md doesn't show the zenodo DOI badge anymore. It will be added again once the zenodo integration is fixed.

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trias 3.2.0

• Add new function get_nubkeys() to retrieve unique GBIF Backbone taxon keys from a species checklist.

trias 3.1.3

• Function pathways_cbd() is deprecated. Use data frame pathwayscbd directly (#134).
• Add vignettes about checklist and occurrence based functions (#170).

trias 3.1.2

• Allow empty pathways in visualize_pathways_level1() and visualize_pathways_level2() functions (#168).

trias 3.1.1

• Fix a bug in indicator_native_range_year() when response_type = "cumulative" and x_include_missing = TRUE (#166). Unit-tests for indicator_native_range_year() are also extended.
• Add some more examples in documentation of indicator_native_range_year().
• Improved the logic for determining x-axis scale steps to better handle cases with a small range of years.
• Fix gbif_verify_keys() and its tests. It appeared a strange anomaly while checking if a key is a valid taxon key. Also, made use for the first time of the rgbif patch (#805) to avoid GBIF API issues for Windows users (#165).

trias 3.1.0

• Improve indicator_native_range_year(): Add option x_include_missing for including missing years as gaps on x-axis in the plot (#163).

trias 3.0.3

• Align code in verify_taxa() to tidyselect 1.1.0: using an external vector in selections was deprecated in tidyselect 1.1.0.

trias 3.0.2

• Improve apply_gam() to avoid emerging status change for negligible near zero values (#150).
• Show all emerging status values in the legend of the plots returned by apply_gam() (#152).
• CITATION.cff is updated automatically via GitHub Actions (#151).

trias 3.0.1

• Function get_cred() is not exported anymore (#146). Internally used only.
• Add CITATION.cff (#139)

trias 3.0.0

• Allow to specify x-scale stepsize for indicator_native_range_year() (#143)
• Allow to specify response_type for indicator_native_range_year() to display "absolute", "relative" or "cumulative" values (inbo/alien-species-portal#119).
• Deprecate relative argument in indicator_native_range_year() in favor of response_type argument.
• Fix duplicate filtering for indicator_native_range_year() (#145)
• x-axis breaks for indicator_native_range_year() and indicator_introduction_year() are prettified by using an help function, nice_seq().