Package: inbodb 0.0.6

Els Lommelen

inbodb: Connect to and Retrieve Data from Databases on the INBO Server

A bundle of functions to connect to and retrieve data from databases on the INBO server, with dedicated functions to query some of these databases.

Authors:Els Lommelen [aut, cre], Hans Van Calster [aut], Els De Bie [aut], Floris Vanderhaeghe [aut], Frederic Piesschaert [aut], Toon Westra [aut], Stijn Van Hoey [ctb], Research Institute for Nature and Forest [cph, fnd]

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inbodb.pdf |inbodb.html✨
inbodb/json (API)
NEWS

# Install 'inbodb' in R:
install.packages('inbodb', repos = c('https://inbo.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/inbo/inbodb/issues

On CRAN:

database

5.97 score 1 packages 111 scripts 22 exports 24 dependencies

Last updated 2 months agofrom:ced4643b25. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 21 2024
R-4.5-winNOTEOct 21 2024
R-4.5-linuxNOTEOct 21 2024
R-4.4-winOKOct 21 2024
R-4.4-macOKOct 21 2024
R-4.3-winOKOct 21 2024
R-4.3-macOKOct 21 2024

Exports:connect_inbo_dbasedbDisconnectdbFetchget_florabank_observationsget_florabank_taxon_ifbl_yearget_florabank_traitsget_inboveg_classificationget_inboveg_headerget_inboveg_layer_coverget_inboveg_layer_qualifierget_inboveg_ppaget_inboveg_qualifierget_inboveg_recordingget_inboveg_relation_recordingget_inboveg_surveyget_meetnetten_locationsget_meetnetten_observationsget_meetnetten_schemesget_meetnetten_visitsget_taxonlijsten_featuresget_taxonlijsten_itemsget_taxonlijsten_lists

Dependencies:assertthatbitbit64blobcliDBIdplyrfansigenericsgluehmslifecyclemagrittrodbcpillarpkgconfigR6Rcpprlangtibbletidyselectutf8vctrswithr

How to retrieve data from the INBOVEG database

Els De Bie, Hans Van Calster, Jo Loos

Rendered fromget_data_inboveg.Rmdusingknitr::rmarkdownon Oct 21 2024.

Last update: 2024-08-22
Started: 2021-01-08

How to retrieve data from the Meetnetten database

Toon Westra, Frederic Piesschaert

Rendered fromget_data_meetnetten.Rmdusingknitr::rmarkdownon Oct 21 2024.

Last update: 2024-08-22
Started: 2024-08-22

How to retrieve data from the Taxonlijsten database

Frederic Piesschaert, Dirk Maes, Els Lommelen

Rendered fromget_data_taxonlijsten.Rmdusingknitr::rmarkdownon Oct 21 2024.

Last update: 2024-08-22
Started: 2024-08-22

odbc query problem

Rendered fromodbc_query_problem.Rmdusingknitr::rmarkdownon Oct 21 2024.

Last update: 2024-08-22
Started: 2020-04-27

Readme and manuals

Help Manual

Help pageTopics
Connect to an INBO databaseconnect_inbo_dbase
Close database connectiondbDisconnect,OdbcConnection-method
Fetch query result from databasedbFetch,OdbcResult-method
Get all validated observations for one or more taxa from the florabank databaseget_florabank_observations
Get unique combinations of taxon, IFBL-square and year.get_florabank_taxon_ifbl_year
Query the florabank to get taxon trait values for (a) taxon trait(s)get_florabank_traits
Query classification information from INBOVEGget_inboveg_classification
Query header information from INBOVEGget_inboveg_header
Query layer information of the cover for recordings (relevé) from INBOVEGget_inboveg_layer_cover
Query layer qualifier information of recordings (relevé) from INBOVEGget_inboveg_layer_qualifier
Query PPA (point-plant distance) information from INBOVEGget_inboveg_ppa
Query qualifier information of recordings (relevé) from INBOVEGget_inboveg_qualifier
Query recording (relevé) information from INBOVEGget_inboveg_recording
Query relation (Parent - Child) information of recordings (relevé) from INBOVEGget_inboveg_relation_recording
Query survey information from INBOVEGget_inboveg_survey
Query monitoring scheme locations from Meetnettenget_meetnetten_locations
Query observation data from Meetnettenget_meetnetten_observations
Overview of monitoring schemes in the Meetnetten databaseget_meetnetten_schemes
Query visit data from Meetnettenget_meetnetten_visits
Query to extract Taxonlist features from 'D0156_00_Taxonlijsten'get_taxonlijsten_features
Query to extract the taxa on a taxonlist from 'D0156_00_Taxonlijsten'get_taxonlijsten_items
Query to extract Taxonlijsten from 'D0156_00_Taxonlijsten'get_taxonlijsten_lists