Package: inbodb 0.0.10

Els Lommelen

inbodb: Connect to and Retrieve Data from Databases on the INBO Server

A bundle of functions to connect to and retrieve data from databases on the INBO server, with dedicated functions to query some of these databases.

Authors:Els Lommelen [aut, cre], Hans Van Calster [aut], Els De Bie [aut], Floris Vanderhaeghe [aut], Frederic Piesschaert [aut], Toon Westra [aut], Stijn Van Hoey [ctb], Research Institute for Nature and Forest [cph, fnd]

inbodb_0.0.10.tar.gz
inbodb_0.0.10.zip(r-4.7)inbodb_0.0.10.zip(r-4.6)inbodb_0.0.10.zip(r-4.5)
inbodb_0.0.10.tgz(r-4.6-any)inbodb_0.0.10.tgz(r-4.5-any)
inbodb_0.0.10.tar.gz(r-4.7-any)inbodb_0.0.10.tar.gz(r-4.6-any)
inbodb_0.0.10.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
inbodb/json (API)

# Install 'inbodb' in R:
install.packages('inbodb', repos = c('https://inbo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/inbo/inbodb/issues

Pkgdown/docs site:https://inbo.github.io

On CRAN:

Conda:

database

6.21 score 1 packages 130 scripts 22 exports 23 dependencies

Last updated from:fe551aa70a. Checks:7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING149
source / vignettesOK214
linux-release-x86_64WARNING151
macos-release-arm64WARNING88
macos-oldrel-arm64WARNING93
windows-develWARNING92
windows-releaseWARNING100
windows-oldrelWARNING99
wasm-releaseOK121

Exports:connect_inbo_dbasedbDisconnectdbFetchget_florabank_observationsget_florabank_taxon_ifbl_yearget_florabank_traitsget_inboveg_classificationget_inboveg_headerget_inboveg_layer_coverget_inboveg_layer_qualifierget_inboveg_ppaget_inboveg_qualifierget_inboveg_recordingget_inboveg_relation_recordingget_inboveg_surveyget_meetnetten_locationsget_meetnetten_observationsget_meetnetten_schemesget_meetnetten_visitsget_taxonlijsten_featuresget_taxonlijsten_itemsget_taxonlijsten_lists

Dependencies:assertthatbitbit64blobcliDBIdplyrgenericsgluehmslifecyclemagrittrodbcpillarpkgconfigR6Rcpprlangtibbletidyselectutf8vctrswithr

How to retrieve data from the INBOVEG database
Introduction | Aim | Packages and connection | Functionality | Survey information | Header information | Recording information | Classification information | Qualifiers information | Layer information | Layer qualifiers | Parent-child relationships between recordings | Processing the retrieved data | More complex queries | Closing the connection
Rendered fromget_data_inboveg.Rmdusingknitr::rmarkdown

Last update: 2026-04-21
Started: 2021-01-08

How to retrieve data from the Taxonlijsten database
Introduction | Aim | Data issues or missing taxonlist | Packages and connection | Functionality | Taxonlists overview | Taxonlist features | Taxonlist items | More complex queries | Closing the connection | Database philosophy | Taxonlijst | TaxonlijstVersie | Taxonlijstitem | TaxonlijstitemInterpretatie | Taxon | Kenmerk (= feature) | Kenmerkwaarde | TaxonlijstItemAttribuut | Full data model
Rendered fromget_data_taxonlijsten.Rmdusingknitr::rmarkdown

Last update: 2026-04-21
Started: 2024-08-22

How to retrieve data from the Meetnetten database
Introduction | Aim | Packages and connection | Functionality | Information on monitoring schemes | Locations and sublocation of monitoring schemes | Visits | Observations | Closing the connection | Data policy
Rendered fromget_data_meetnetten.Rmdusingknitr::rmarkdown

Last update: 2025-02-19
Started: 2024-08-22

odbc query problem
Description of the problem | Some background on SQL Server and odbc data types | Consulting data types
Rendered fromodbc_query_problem.Rmdusingknitr::rmarkdown

Last update: 2024-08-22
Started: 2020-04-27

Readme and manuals

Help Manual

Help pageTopics
Connect to an INBO databaseconnect_inbo_dbase
Close database connectiondbDisconnect,OdbcConnection-method
Fetch query result from databasedbFetch,OdbcResult-method
Get all validated observations for one or more taxa from the florabank databaseget_florabank_observations
Get unique combinations of taxon, IFBL-square and year.get_florabank_taxon_ifbl_year
Query the florabank to get taxon trait values for (a) taxon trait(s)get_florabank_traits
Query classification information from INBOVEGget_inboveg_classification
Query header information from INBOVEGget_inboveg_header
Query layer information of the cover for recordings (relevé) from INBOVEGget_inboveg_layer_cover
Query layer qualifier information of recordings (relevé) from INBOVEGget_inboveg_layer_qualifier
Query PPA (point-plant distance) information from INBOVEGget_inboveg_ppa
Query qualifier information of recordings (relevé) from INBOVEGget_inboveg_qualifier
Query recording (relevé) information from INBOVEGget_inboveg_recording
Query relation (Parent - Child) information of recordings (relevé) from INBOVEGget_inboveg_relation_recording
Query survey information from INBOVEGget_inboveg_survey
Query monitoring scheme locations from Meetnettenget_meetnetten_locations
Query observation data from Meetnettenget_meetnetten_observations
Overview of monitoring schemes in the Meetnetten databaseget_meetnetten_schemes
Query visit data from Meetnettenget_meetnetten_visits
Query to extract Taxonlist features from 'D0156_00_Taxonlijsten'get_taxonlijsten_features
Query to extract the taxa on a taxonlist from 'D0156_00_Taxonlijsten'get_taxonlijsten_items
Query to extract Taxonlijsten from 'D0156_00_Taxonlijsten'get_taxonlijsten_lists