Package: camtraptor 1.0.1

Damiano Oldoni

camtraptor: Explore and Visualize Camera Trap Data Packages

Explore and visualize Camera Trap Data Packages ('Camtrap DP', <https://camtrap-dp.tdwg.org/>). camtraptor offers a step-by-step workflow to read Camtrap DP files, filter data of interest, summarize information (e.g. number of observed species) and visualize this per deployment on an interactive map. You can also use it to transform data for analysis in 'camtrapR'.

Authors:Damiano Oldoni [aut, cre], Peter Desmet [aut], Sanne Govaert [aut], Pieter Huybrechts [aut], Wolf Missotten [aut], Martijn Bollen [ctb], Jim Casaer [ctb], Nele Mullens [ctb], northfox [ctb], Raphaël Nussbaumer [ctb], Thierry Onkelinx [ctb], Lynn Pallemaerts [ctb], Research Institute for Nature and Forest [cph], Research Foundation - Flanders [fnd]

camtraptor_1.0.1.tar.gz
camtraptor_1.0.1.zip(r-4.7-any)camtraptor_1.0.1.zip(r-4.6-any)camtraptor_1.0.1.zip(r-4.5-any)
camtraptor_1.0.1.tgz(r-4.6-any)camtraptor_1.0.1.tgz(r-4.5-any)
camtraptor_1.0.1.tar.gz(r-4.7-any)camtraptor_1.0.1.tar.gz(r-4.6-any)
camtraptor_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
camtraptor/json (API)

# Install 'camtraptor' in R:
install.packages('camtraptor', repos = c('https://inbo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/inbo/camtraptor/issues

Pkgdown/docs site:https://inbo.github.io

Datasets:

On CRAN:

Conda:

camera-trapscamtrap-dposcibio

6.65 score 16 stars 29 scripts 62 exports 101 dependencies

Last updated from:9f642800a4. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK240
source / vignettesOK253
linux-releaseOK676
macos-releaseOK194
macos-oldrelOK165
windows-develOK192
windows-releaseOK204
windows-oldrelOK236
wasm-releaseOK162

Exports:%>%add_coordinatesanimal_posapply_filter_predicatecalc_animal_poscalculate_individual_radius_anglecalib_modelscheck_speciescontributorscontributors<-deploymentsdeployments<-eventsexample_datasetfilter_deploymentsfilter_mediafilter_observationsfilter_out_timelapseget_cam_opget_custom_effortget_detection_historyget_effortget_n_individualsget_n_obsget_n_speciesget_raiget_rai_individualsget_record_tableget_scientific_nameget_speciesindividualslocationsmap_depmap_summarymediamedia<-micaobservationsobservations<-predpred_andpred_gtpred_gtepred_inpred_ltpred_ltepred_napred_notpred_notinpred_notnapred_orread_camtrap_dpread_camtrapdpread_wiround_coordinatessummarise_deploymentssummarise_observationssummarize_deploymentssummarize_observationstaxawrite_dwcwrite_eml

Dependencies:activityaskpassassertthatbase64encbitbit64bslibcachemcamtrapdpclassclassIntclicliprcpp11crayoncrosstalkcurlDBIdigestdplyre1071EMLemldevaluatefarverfastmapfontawesomefrictionlessfsgenericsgluehighrhmshtmltoolshtmlwidgetshttrjqrjquerylibjsonldjsonliteKernSmoothknitrlabelinglatticelazyevalleafletleaflet.providerslifecyclelubridatemagrittrmemoisemimeopenssloverlappbapplypillarpkgconfigplyrpngprettyunitsprogressproxypurrrR6rappdirsrasterRColorBrewerRcppreadrreshape2rlangrmarkdowns2sassscalessfsnakecasespstringistringrsuntoolssysterratibbletidyrtidyselecttimechangetinytextzdbunitsutf8uuidV8vctrsviridisLitevroomwithrwkxfunxml2yaml

Calculate animal position
Setup | Calculate radius and angle | Specifying column names
Rendered fromcalculate-animal-position.Rmdusingknitr::rmarkdown

Last update: 2026-09-09
Started: 2026-09-09

Camera operation matrix
Setup | Generating the camera operation matrix | Station names | Session and camera IDs
Rendered fromcamera-operation-matrix.Rmdusingknitr::rmarkdown

Last update: 2026-09-09
Started: 2021-08-03

Detection history matrix
Setup | Detection history | Output types | Occasion length | Minimum active days per occasion | Maximum number of days | Start date | Buffer | Multi-season detection history
Rendered fromdetection-history-matrix.Rmdusingknitr::rmarkdown

Last update: 2026-09-09
Started: 2026-09-09

Record table
Setup | Species record table | Temporal independence | Exclude some species | Station names | Remove duplicates | Other arguments needed?
Rendered fromrecord-table.Rmdusingknitr::rmarkdown

Last update: 2026-09-09
Started: 2021-08-19

Visualize deployment features
Setup | Create maps | Basic usage | Number of detected species | Number of events observed | Number of observations | Number of individuals | RAI (observations) | RAI (individuals) | Effort | Visualize deployments without detected animals | Clustering and hovering | Styling | Use a color palette | Use a specific icon and color for zero values | Modify circle size | Use absolute scale
Rendered fromvisualize-deployment-features.Rmdusingknitr::rmarkdown

Last update: 2026-09-09
Started: 2021-03-29

Workflow
Setup | Reading data | Exploring data | Filtering data | Summarizing data | Visualizing data | Putting it all together
Rendered fromworkflow.Rmdusingknitr::rmarkdown

Last update: 2026-09-09
Started: 2026-09-09

Readme and manuals

Help Manual

Help pageTopics
Add deployment coordinates to observationsadd_coordinates
Deprecated datasets in camtraptoranimal_pos
Sample of animal position digitization dataanimal_positions
Calculate animal positioncalc_animal_pos
Calculate animal positioncalculate_individual_radius_angle
Deprecated datasets in camtraptorcalib_models
Sample of deployment calibration modelscalibration_models
Get or set contributorscontributors contributors<-
Get or set deploymentsdeployments deployments<-
Get eventsevents
Read the Camtrap DP example datasetexample_dataset
Filter deploymentsfilter_deployments
Filter mediafilter_media
Filter observationsfilter_observations
Filter out timelapse observationsfilter_out_timelapse
Get the camera operation matrixget_cam_op
Get custom effortget_custom_effort
Get the detection history of a speciesget_detection_history
Get effortget_effort
Get number of individuals for each deploymentget_n_individuals
Get number of observations for each deploymentget_n_obs
Get number of identified species for each deploymentget_n_species
Get Relative Abundance Index (RAI)get_rai
Get Relative Abundance Index (RAI) based on the sum of individual countsget_rai_individuals
Get the record tableget_record_table
Get speciesget_species
Get individualsindividuals
Get locationslocations
Visualize deployments featuresmap_dep
Visualize deployments featuresmap_summary
Get or set mediamedia media<-
Deprecated datasets in camtraptormica
Get or set observationsobservations observations<-
Read a Camera Trap Data Packageread_camtrap_dp
Read a Camera Trap Data Packageread_camtrapdp
Summarize deployments informationsummarise_deployments summarize_deployments
Summarize observations informationsummarise_observations summarize_observations
Get taxataxa