Package: forrescalc 0.0.1

Els Lommelen

forrescalc: Calculation of Aggregated Values on Dendrometry, Regeneration and Vegetation of Forests, Starting from Individual Tree Measures from Fieldmap

A collection of functions to load and aggregate measurements related to dendrometry, rejuvenation and vegetation, and to access plot level results from Flemish forest reserves in data package forresdat.

Authors:Els Lommelen [aut, cre], Anja Leyman [aut], Research Institute for Nature and Forest [cph, fnd]

forrescalc_0.0.1.tar.gz
forrescalc_0.0.1.zip(r-4.7)forrescalc_0.0.1.zip(r-4.6)forrescalc_0.0.1.zip(r-4.5)
forrescalc_0.0.1.tgz(r-4.6-any)forrescalc_0.0.1.tgz(r-4.5-any)
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forrescalc_0.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
forrescalc/json (API)

# Install 'forrescalc' in R:

install.packages('forrescalc', repos = c('https://inbo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/inbo/forrescalc/issues

Pkgdown/docs site:https://inbo.github.io

On CRAN:

3.85 score 141 scripts 56 exports 56 dependencies

Last updated from:4325507252. Checks:7 ERROR, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	ERROR	169
source / vignettes	OK	206
linux-release-x86_64	ERROR	165
macos-release-arm64	ERROR	136
macos-oldrel-arm64	ERROR	110
windows-devel	ERROR	173
windows-release	ERROR	121
windows-oldrel	ERROR	137
wasm-release	OK	140

Exports:add_zeros calc_deadw_decay_plot calc_deadw_decay_plot_species calc_dendro_plot calc_dendro_plot_species calc_diam_plot calc_diam_plot_species calc_diam_statistics_species calc_intact_deadwood calc_reg_core_area_height_spec calc_reg_core_area_species calc_reg_plot calc_reg_plot_height calc_reg_plot_height_species calc_reg_plot_species calc_variables_stem_level calc_variables_tree_level calc_veg_core_area_species calc_veg_plot calculate_dendrometry calculate_regeneration calculate_vegetation check_data_deadwood check_data_fmdb check_data_herblayer check_data_plotdetails check_data_plots check_data_regeneration check_data_regspecies check_data_shoots check_data_trees check_data_vegetation check_trees_evolution compare_periods_per_plot compose_stem_data create_statistics create_unique_tree_id from_access_to_forresdat from_forresdat_to_access give_diamclass_5cm load_data_deadwood load_data_dendrometry load_data_herblayer load_data_regeneration load_data_shoots load_data_vegetation load_height_models load_plotinfo make_table_wide read_forresdat read_forresdat_table remove_last_commit_forresdat remove_table_forresdat save_results_access save_results_csv save_results_forresdat

Dependencies:askpass assertthat bit bit64 blob cachem cellranger cli clipr cpp11 crayon curl DBI dplyr fastmap frictionless fs generics git2r glue hms httr jsonlite lifecycle lubridate magrittr memoise mime odbc openssl pillar pkgconfig plyr prettyunits progress purrr R6 Rcpp readr readxl rematch rlang RSQLite stringi stringr sys tibble tidyr tidyselect timechange tzdb utf8 vctrs vroom withr yaml

Overview package forrescalc

Rendered fromoverview_forrescalc.Rmdusingknitr::rmarkdown

Last update: 2024-09-23
Started: 2020-06-23

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Add records with value zero for missing variable combinations in a given dataset	add_zeros
aggregate parameters by decay stage, plot and year	calc_deadw_decay_plot
aggregate parameters by decay stage, plot, tree species and year	calc_deadw_decay_plot_species
aggregate parameters by plot and year	calc_dendro_plot
aggregate parameters by plot and tree species	calc_dendro_plot_species
aggregate parameters by diameter class, plot and year	calc_diam_plot
aggregate parameters by diameter class, plot, tree species and year	calc_diam_plot_species
Give diameter statistics by forest reserve, species and year	calc_diam_statistics_species
Calculate bole and crown volume of intact deadwood	calc_intact_deadwood
aggregate regeneration parameters by plot, height, species and year	calc_reg_core_area_height_spec
aggregate regeneration parameters by plot, species and year	calc_reg_core_area_species
calculate species number by plot and year	calc_reg_plot
calculate species number by plot, tree height class and year	calc_reg_plot_height
aggregate parameters by plot, tree height class, species and year	calc_reg_plot_height_species
calculate regeneration parameters by plot, species and year	calc_reg_plot_species
Calculate additional variables on stem level	calc_variables_stem_level
Calculate additional variables on tree level	calc_variables_tree_level
aggregate vegetation parameters by core area, species and year	calc_veg_core_area_species
aggregate vegetation parameters by plot and year	calc_veg_plot
Calculates and aggregates parameters on dendrometry of trees	calculate_dendrometry
aggregates parameters on regeneration of trees	calculate_regeneration
aggregates parameters on vegetation of forests	calculate_vegetation
check table Deadwood from 'Fieldmap' database for inconsistencies	check_data_deadwood
check tables from 'Fieldmap' database for inconsistencies	check_data_fmdb
check table 'Herblayer' from 'Fieldmap' database for inconsistencies	check_data_herblayer
check table 'Plotdetails' from 'Fieldmap' database for inconsistencies	check_data_plotdetails
check table 'Plots' from 'Fieldmap' database for inconsistencies	check_data_plots
check table 'Regeneration' from 'Fieldmap' database for inconsistencies	check_data_regeneration
check table 'RegSpecies' from 'Fieldmap' database for inconsistencies	check_data_regspecies
check table 'Shoots' from 'Fieldmap' database for inconsistencies	check_data_shoots
check table 'Trees' from 'Fieldmap' database for inconsistencies	check_data_trees
check table 'Vegetation' from 'Fieldmap' database for inconsistencies	check_data_vegetation
check table 'Trees' from 'Fieldmap' database for inconsistencies between periods	check_trees_evolution
compare parameters between periods (years that parameters are measured)	compare_periods_per_plot
Combine dendro data and shoot data to give detailed stem data	compose_stem_data
Calculate statistics for the given dataset	create_statistics
create_unique_tree_id for each individual tree over different years	create_unique_tree_id
copy table(s) from access database to git repository 'forresdat'	from_access_to_forresdat
copy table(s) from git repository 'forresdat' to access database	from_forresdat_to_access
Calculate the diameter class of diameter measure data	give_diamclass_5cm
retrieves data on logs from 'Fieldmap' database	load_data_deadwood
retrieve dendrometry data from 'Fieldmap' database	load_data_dendrometry
retrieve species specific vegetation data from 'Fieldmap' database	load_data_herblayer
retrieve regeneration data from 'Fieldmap' database	load_data_regeneration
retrieve data on shoots from 'Fieldmap' database	load_data_shoots
retrieve vegetation data from 'Fieldmap' database	load_data_vegetation
retrieve height model data from git repository 'forresheights'	load_height_models
retrieve generic plot data from 'Fieldmap' database	load_plotinfo
change dataframe from long to wide format	make_table_wide
load data package from git repository 'forresdat'	read_forresdat
load tables from git repository 'forresdat'	read_forresdat_table
remove last local change from git repository 'forresdat'	remove_last_commit_forresdat
remove table(s) from data package 'forresdat'	remove_table_forresdat
save results of calculations in Access database	save_results_access
save results of calculations as '.csv'-files	save_results_csv
save results of calculations in git repository 'forresdat'	save_results_forresdat