Package: trias 2.3.1

Damiano Oldoni

trias: Process Data for the Project Tracking Invasive Alien Species (TrIAS)

This package provides functionality to facilitate the data processing for the project Tracking Invasive Alien Species (TrIAS <http://trias-project.be>).

Authors:Damiano Oldoni [aut, cre], Soria Delva [aut], Tim Adriaens [ctb], Peter Desmet [ctb], Sander Devisscher [aut], Stijn Van Hoey [ctb], Pieter Huybrechts [ctb], Machteld Varewyck [ctb], Research Institute for Nature and Forest [cph, fnd], TrIAS [fnd], LIFE RIPARIAS [fnd], European Union's Horizon Europe Research and Innovation Programme [fnd]

trias_2.3.1.tar.gz
trias_2.3.1.zip(r-4.5)trias_2.3.1.zip(r-4.4)trias_2.3.1.zip(r-4.3)
trias_2.3.1.tgz(r-4.4-any)trias_2.3.1.tgz(r-4.3-any)
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trias.pdf |trias.html✨
trias/json (API)

# Install 'trias' in R:
install.packages('trias', repos = c('https://inbo.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/trias-project/trias/issues

Datasets:
  • future - Future climate list of sf objects
  • legends - Legends for climate shapefiles
  • observed - Historical climate sf objects

On CRAN:

invasive-speciesoscibio

18 exports 3 stars 1.75 score 121 dependencies 35 scripts

Last updated 2 months agofrom:4b6fe61d57. Checks:OK: 1 NOTE: 6. Indexed: no.

TargetResultDate
Doc / VignettesOKAug 17 2024
R-4.5-winNOTEAug 17 2024
R-4.5-linuxNOTEAug 17 2024
R-4.4-winNOTEAug 17 2024
R-4.4-macNOTEAug 17 2024
R-4.3-winNOTEAug 17 2024
R-4.3-macNOTEAug 17 2024

Exports:apply_decision_rulesapply_gamclimate_matchgbif_get_taxagbif_has_distributiongbif_verify_keysget_credget_table_pathwaysindicator_introduction_yearindicator_native_range_yearindicator_total_yearpathways_cbdupdate_download_listverify_taxavisualize_pathways_level1visualize_pathways_level2visualize_pathways_year_level1visualize_pathways_year_level2

Dependencies:askpassassertableassertthatbase64encBHbitbit64bslibcachemclassclassIntclicliprcolorspacecpp11crayoncrosstalkcrulcurldata.tableDBIdigestdplyre1071eggevaluatefansifarverfastmapfontawesomeforcatsfsgenericsggokabeitoggplot2gluegratiagridExtragtablehighrhmshtmltoolshtmlwidgetshttpcodehttrisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleafletleaflet.providerslifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellmvnfastnlmeoaiopensslpatchworkpillarpkgconfigplotlyplyrpngprettyunitsprogresspromisesproxypurrrR6rappdirsrasterRColorBrewerRcppRcppArmadilloreadrreshape2rgbifrlangrmarkdownrnaturalearthrstudioapis2sassscalessfspstringistringrsvDialogssvGUIsysterratibbletidyrtidyselecttinytextriebeardtzdbunitsurltoolsutf8vctrsviridisLitevroomwhiskerwithrwkxfunxml2yaml

Readme and manuals

Help Manual

Help pageTopics
Apply decision rules to time series and assess emerging statusapply_decision_rules
Apply GAM to time series and assess emerging statusapply_gam
Create a set of climate matching outputsclimate_match
Future climate list of sf objectsfuture
Get taxa information from GBIFgbif_get_taxa
Compare desired distribution information with actual one.gbif_has_distribution
Check keys against GBIF Backbone Taxonomygbif_verify_keys
Interactively get & store credentials in the system environmentget_cred
Pathway count indicator tableget_table_pathways
Plot number of new introductions per year.indicator_introduction_year
Create an interactive plot for the number of alien species per native region and year of introductionindicator_native_range_year
Create cumulative number of alien species indicator plot.indicator_total_year
Legends for climate shapefileslegends
Historical climate sf objectsobserved
Pathways of introduction as defined by CBDpathways_cbd
Plot time series with confidence limits and emerging statusplot_ribbon_em
Update the list with all downloadsupdate_download_list
Verify taxa that the GBIF Backbone Taxonomy does not recognize or will lumpverify_taxa
Plot number of introduced taxa for CBD pathways level 1visualize_pathways_level1
Plot number of introduced taxa for CBD pathways level 2visualize_pathways_level2
Plot number of introduced taxa over time for pathways level 1visualize_pathways_year_level1
Plot number of introduced taxa over time for pathways level 2visualize_pathways_year_level2