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Package: trias 3.0.1

Damiano Oldoni

trias: Process Data for the Project Tracking Invasive Alien Species (TrIAS)

This package provides functionality to facilitate the data processing for the project Tracking Invasive Alien Species (TrIAS <http://trias-project.be>).

Authors:Damiano Oldoni [aut, cre], Soria Delva [aut], Tim Adriaens [ctb], Peter Desmet [ctb], Sander Devisscher [aut], Stijn Van Hoey [ctb], Pieter Huybrechts [ctb], Machteld Varewyck [aut], Research Institute for Nature and Forest [cph, fnd], TrIAS [fnd], LIFE RIPARIAS [fnd], European Union's Horizon Europe Research and Innovation Programme [fnd]

trias_3.0.1.tar.gz
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trias.pdf |trias.html✨
trias/json (API)
NEWS

# Install 'trias' in R:

install.packages('trias', repos = c('https://inbo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/trias-project/trias/issues

Pkgdown:https://trias-project.github.io

Datasets:

future - Future climate list of sf objects
legends - Legends for climate shapefiles
observed - Historical climate sf objects

On CRAN:

invasive-species oscibio

4.64 score 3 stars 36 scripts 17 exports 121 dependencies

Last updated 1 months agofrom:866688934d. Checks:OK: 1 NOTE: 6. Indexed: no.

Target	Result	Date
Doc / Vignettes	OK	Dec 18 2024
R-4.5-win	NOTE	Dec 18 2024
R-4.5-linux	NOTE	Dec 18 2024
R-4.4-win	NOTE	Dec 18 2024
R-4.4-mac	NOTE	Dec 18 2024
R-4.3-win	NOTE	Dec 18 2024
R-4.3-mac	NOTE	Dec 18 2024

Exports:apply_decision_rules apply_gam climate_match gbif_get_taxa gbif_has_distribution gbif_verify_keys get_table_pathways indicator_introduction_year indicator_native_range_year indicator_total_year pathways_cbd update_download_list verify_taxa visualize_pathways_level1 visualize_pathways_level2 visualize_pathways_year_level1 visualize_pathways_year_level2

Dependencies:askpass assertable assertthat base64enc BH bit bit64 bslib cachem class classInt cli clipr colorspace cpp11 crayon crosstalk crul curl data.table DBI digest dplyr e1071 egg evaluate fansi farver fastmap fontawesome forcats fs generics ggokabeito ggplot2 glue gratia gridExtra gtable highr hms htmltools htmlwidgets httpcode httr isoband jquerylib jsonlite KernSmooth knitr labeling later lattice lazyeval leaflet leaflet.providers lifecycle magrittr MASS Matrix memoise mgcv mime munsell mvnfast nlme oai openssl patchwork pillar pkgconfig plotly plyr png prettyunits progress promises proxy purrr R6 rappdirs raster RColorBrewer Rcpp RcppArmadillo readr reshape2 rgbif rlang rmarkdown rnaturalearth rstudioapi s2 sass scales sf sp stringi stringr svDialogs svGUI sys terra tibble tidyr tidyselect tinytex triebeard tzdb units urltools utf8 vctrs viridisLite vroom whisker withr wk xfun xml2 yaml

Help page	Topics
Apply decision rules to time series and assess emerging status	apply_decision_rules
Apply GAM to time series and assess emerging status	apply_gam
Create a set of climate matching outputs	climate_match
Future climate list of sf objects	future
Get taxa information from GBIF	gbif_get_taxa
Compare desired distribution information with actual one.	gbif_has_distribution
Check keys against GBIF Backbone Taxonomy	gbif_verify_keys
Pathway count indicator table	get_table_pathways
Plot number of new introductions per year.	indicator_introduction_year
Create an interactive plot for the number of alien species per native region and year of introduction	indicator_native_range_year
Create cumulative number of alien species indicator plot.	indicator_total_year
Legends for climate shapefiles	legends
Historical climate sf objects	observed
Pathways of introduction as defined by CBD	pathways_cbd
Plot time series with confidence limits and emerging status	plot_ribbon_em
Update the list with all downloads	update_download_list
Verify taxa that the GBIF Backbone Taxonomy does not recognize or will lump	verify_taxa
Plot number of introduced taxa for CBD pathways level 1	visualize_pathways_level1
Plot number of introduced taxa for CBD pathways level 2	visualize_pathways_level2
Plot number of introduced taxa over time for pathways level 1	visualize_pathways_year_level1
Plot number of introduced taxa over time for pathways level 2	visualize_pathways_year_level2

Package: trias 3.0.1

trias: Process Data for the Project Tracking Invasive Alien Species (TrIAS)

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