Package: trias 3.2.4

Damiano Oldoni

trias: Process Data for the Project Tracking Invasive Alien Species (TrIAS)

R package to provide functionality to facilitate the data processing for the project Tracking Invasive Alien Species (TrIAS <https://trias-project.be>).

Authors:Damiano Oldoni [aut, cre], Soria Delva [aut], Tim Adriaens [ctb], Peter Desmet [ctb], Sander Devisscher [aut], Stijn Van Hoey [ctb], Pieter Huybrechts [ctb], Saar Junius [ctb], Machteld Varewyck [aut], Research Institute for Nature and Forest [cph, fnd], TrIAS [fnd], LIFE RIPARIAS [fnd], European Union [fnd]

trias_3.2.4.tar.gz
trias_3.2.4.zip(r-4.7)trias_3.2.4.zip(r-4.6)trias_3.2.4.zip(r-4.5)
trias_3.2.4.tgz(r-4.6-any)trias_3.2.4.tgz(r-4.5-any)
trias_3.2.4.tar.gz(r-4.7-any)trias_3.2.4.tar.gz(r-4.6-any)
trias_3.2.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
trias/json (API)
NEWS

# Install 'trias' in R:
install.packages('trias', repos = c('https://inbo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/trias-project/trias/issues

Pkgdown/docs site:https://trias-project.github.io

Datasets:
  • future - Future climate list of sf objects
  • legends - Legends for climate shapefiles
  • observed - Historical climate sf objects
  • pathwayscbd - Pathways of introduction as defined by CBD

On CRAN:

Conda:

invasive-speciesoscibio

6.11 score 4 stars 45 scripts 18 exports 124 dependencies

Last updated from:871e3b953d. Checks:7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE314
source / vignettesOK283
linux-release-x86_64NOTE262
macos-release-arm64NOTE168
macos-oldrel-arm64NOTE178
windows-develNOTE239
windows-releaseNOTE213
windows-oldrelNOTE191
wasm-releaseOK167

Exports:apply_decision_rulesapply_gamclimate_matchgbif_get_taxagbif_has_distributiongbif_verify_keysget_nubkeysget_table_pathwaysindicator_introduction_yearindicator_native_range_yearindicator_total_yearpathways_cbdupdate_download_listverify_taxavisualize_pathways_level1visualize_pathways_level2visualize_pathways_year_level1visualize_pathways_year_level2

Dependencies:askpassassertableassertthatbase64encBHbitbit64bslibcachemclassclassIntclicliprcpp11crayoncrosstalkcrulcurldata.tableDBIdigestdplyre1071eggevaluatefarverfastmapfontawesomeforcatsfsgenericsggokabeitoggplot2gluegratiagridExtragtablehighrhmshtmltoolshtmlwidgetshttpcodehttrisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleafletleaflet.providerslifecyclemagrittrMASSMatrixmemoisemgcvmimemiraimvnfastnanonextnlmeoaiopensslotelpatchworkpillarpkgconfigplotlyplyrpngprettyunitsprogresspromisesproxypurrrR6rappdirsrasterRColorBrewerRcppRcppArmadilloreadrreshape2rgbifrlangrmarkdownrnaturalearthrstudioapis2S7sassscalessfspstatmodstringistringrsvDialogssvGUIsysterratibbletidyrtidyselecttinytextriebeardtweedietzdbunitsurltoolsutf8vctrsviridisLitevroomwhiskerwithrwkxfunxml2yaml

Checklist functions

Damiano Oldoni

Rendered fromchecklist-functions.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2026-01-19
Started: 2026-01-19

Occurrence functions

Damiano Oldoni

Rendered fromoccurrence-functions.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2026-01-19
Started: 2026-01-19

Readme and manuals

Help Manual

Help pageTopics
Apply decision rules to time series and assess emerging statusapply_decision_rules
Apply GAM to time series and assess emerging statusapply_gam
Create a set of climate matching outputsclimate_match
Future climate list of sf objectsfuture
Get taxa information from GBIFgbif_get_taxa
Compare desired distribution information with actual onegbif_has_distribution
Check keys against GBIF Backbone Taxonomygbif_verify_keys
Retrieve unique GBIF Backbone taxon keys from a species checklistget_nubkeys
Pathway count indicator tableget_table_pathways
Plot the number of new introductions per yearindicator_introduction_year
Create an interactive plot for the number of alien species per native region and year of introductionindicator_native_range_year
Plot the cumulative number of alien species per yearindicator_total_year
Legends for climate shapefileslegends
Historical climate sf objectsobserved
Pathways of introduction as defined by CBDpathways_cbd
Pathways of introduction as defined by CBDpathwayscbd
Update the list with all downloadsupdate_download_list
Verify taxa that the GBIF Backbone Taxonomy does not recognize or will lumpverify_taxa
Plot number of introduced taxa for CBD pathways level 1visualize_pathways_level1
Plot number of introduced taxa for CBD pathways level 2visualize_pathways_level2
Plot number of introduced taxa over time for pathways level 1visualize_pathways_year_level1
Plot number of introduced taxa over time for pathways level 2visualize_pathways_year_level2